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Healthy carrot cake muffins are low-carb, vegan-friendly, and super easy to make. You only need one bowl, and they always come out fluffy and delicious! 

Healthy carrot cake muffins on a plate with one bite taken

These healthy carrot cake muffins are the perfect mix of sweet with spice.

I usually make them for a ready-to-go breakfast, but they’re also delicious as a healthier version of traditional sweet afternoon tea muffins.

Why you will love healthy carrot cake muffins

  • They have just the right amount of sweetness
  • They’re soft, moist, and full of flavor
  • They’re low-carb, vegan, and gluten-free
  • You can use them for meal-prep
  • They’re packed with fiber and nutrients

Reader reviews

These came out so good! I used baby carrots (as in tiny carrots) because that’s what I had in the fridge. And my batch made enough for 12 muffins. Yummy. Thanks.

Judith
Rating

Healthy carrot cake muffin ingredients

This recipe uses wholesome, nutritious ingredients, and the batter comes together in one bowl!

  • Banana — You want to use overripe bananas to add sweetness and moisture.
  • Shredded carrots — These add classic carrot cake texture as well as vitamins and fiber.
  • Almond flour — This gluten-free, low-carb flour alternative also adds protein and healthy fats.
  • Tapioca starch — Helps bind the muffins and gives them a light, fluffy texture without the need for gluten.
  • Granulated sweetener — I recommend a low-carb sweetener like xylitol, erythritol, monk fruit, or stevia.
  • Baking agents — Baking soda and baking powder help the muffins rise and stay light.
  • Spices — These warming spices give the muffins that classic carrot cake flavor.
  • Coconut oil — This adds moisture with a very subtle coconut flavor.
  • Vanilla extract — The warmth from the vanilla complements the spices perfectly. I recommend using a high-quality vanilla extract.
  • Flax meal — Combined with water, this is a vegan substitute for eggs to help bind the muffins. If you’re not vegan, you can replace with 2 large eggs.
  • Salt — You can adjust to taste.

How to make low-carb carrot cake muffins

Step 1: Preheat your oven to 350 F (180°C) and line a muffin tray with paper muffin cups.

Step 2: Add all of the dry ingredients into a bowl and whisk together thoroughly, making sure there are no lumps and that the spices are spread evenly. 

Dry ingredients for the muffins in a bowl with a whisk

Step 3: Mix the flax meal with the 1/2 cup of water until it becomes a “flax egg”. Allow it to sit for 5 minutes.

Step 4: Make a well in the center of the dry ingredients and add in the coconut oil, flax egg, and vanilla extract. Mix together until a rough dough starts to form, careful to avoid over-mixing.

Step 5: Stir in the mashed bananas and shredded carrots. Mix until just incorporated.

Shredded carrots being added to the muffin batter

Step 6: Spoon the mixture into muffin paper cups until just at the top of the paper. 

Muffin batter in the muffin tray, ready to be baked

Step 7: Bake the muffins for 35 – 40 minutes until baked through. 

Finished muffins still in the muffin tray, as seen from above

Step 8: Allow the muffins to cool in the tray for 10 minutes, then remove and allow to cool to room temperature before serving.

How easy is that? Now you have delicious carrot cake in muffin form to enjoy any time you like!

Recipe tips and tricks

  • Use very ripe bananas for maximum sweetness and moisture.
  • Shred the carrots finely so they blend smoothly into the batter and help keep the muffins moist.
  • Give the muffins time to cool before serving for the best texture.

Substitutions and variations

  • You can use applesauce instead of banana if you prefer a less banana flavor or if it’s more convenient.
  • I sometimes add chopped walnuts or pecans for extra texture and flavor.

What to serve with this recipe

Looking for an extra boost of protein? Enjoy carrot cake muffins with a vegan peanut butter protein smoothie or strawberry tofu smoothie!

They also pair really well with a skinny vanilla almond latte for a boost of caffeine.

Want to pair your muffins with something for a heartier breakfast? Try keto chia pudding or high-protein chocolate overnight oats!

Close-up of a muffin on a plate

Are carrot cake muffins good for people with diabetes?

These muffins use almond flour and low-carb sweeteners, both of which help keep blood sugar levels stable. They’re packed with fiber from the flax meal, carrots, and almond flour, which slows the absorption of sugar and helps maintain steady blood sugar levels.

Plus, they’re sweetened with banana and a low-carb sweetener, making them a delicious, diabetes-friendly treat!

Storage and freezing

  • Carrot cake muffins can be stored in an airtight container at room temperature for 3 days or in the refrigerator for up to a week.
  • You can freeze muffins in an airtight container. They will keep very well for several weeks.

Other healthy muffin recipes

It’s no secret that I like my sweet (but healthy!) foods. From breakfasts to sweet snacks, these muffin recipes are some of my favorites:

For even more inspiration, check out this roundup of my favorite low-carb muffin recipes!

Healthy Carrot Cake Muffins

4.28 from 55 votes
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These healthy carrot cake muffins are low-carb, vegan-friendly, and super easy to make. They use one bowl, take only a few minutes to prepare, and always come out fluffy and delicious!
Prep Time: 5 minutes
Cook Time: 35 minutes
Total Time: 40 minutes
Servings: 8 servings

Ingredients 

Dry ingredients:

  • 1 3/4 cups almond flour
  • 1/4 cup tapioca starch
  • 1/2 cup granulated sweetener of choice, (I used Xylitol)
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder, (make sure it’s a gluten-free version)
  • 1 tablespoon cinnamon
  • 1 teaspoon nutmeg
  • 1/4 teaspoon cloves
  • 1 teaspoon salt

Wet ingredients:

  • 1/3 cup coconut oil
  • 1 teaspoon vanilla extract
  • 4 tablespoon flax meal
  • 1/2 cup water, (replace the flax meal and water with 2 large eggs if not vegan)
  • 1 medium banana, (overripe and mashed)
  • 1 1/2 cups shredded carrots

Instructions

  • Preheat your oven to 350 F (180°C) and line a muffin tray with muffin paper cups.
  • Add all of the dry ingredients into a bowl and whisk together thoroughly, making sure there are no lumps and that the spices are spread evenly.
  • Mix the flax meal with the 1/2 cup of water until it becomes a “flax egg”. Allow it to sit for 5 minutes.
  • Make a well in the center of the dry ingredients and add in the coconut oil, flax egg, and vanilla extract. Mix together until a rough dough starts to form, careful to avoid over-mixing.
  • Stir in the mashed bananas and shredded carrots. Mix until just incorporated. 
  • Spoon the mixture into muffin paper cups until just at the top of the paper.
  • Bake the muffins for 35 – 40 minutes until baked through.
  • Allow the muffins to cool in the tray for 10 minutes, then remove and allow to cool to room temperature before serving.

Notes

This recipe is for 8 muffins.
Muffins can be stored in an airtight container in the freezer for several weeks.
Allow the batter ingredients to come to room temperature before mixing. This prevents the muffins from collapsing in the oven.
Fold the batter together gently. Over-mixing can cause a stiff batter.
The fresher the spices, the better flavor your muffins will have.
Gluten-free baking powder can be replaced with regular baking powder if not gluten-sensitive. For gluten-free, substitute with an extra teaspoon of baking soda.
Muffins are done when the tops have browned and a toothpick inserted in the middle comes out clean.

Nutrition Info Per Serving

Nutrition Facts
Healthy Carrot Cake Muffins
Serving Size
 
1 muffin
Amount per Serving
Calories
189
% Daily Value*
Fat
 
13.9
g
21
%
Saturated Fat
 
8.4
g
42
%
Trans Fat
 
0
g
Polyunsaturated Fat
 
1.7
g
Monounsaturated Fat
 
0.9
g
Cholesterol
 
0
mg
0
%
Sodium
 
226.5
mg
9
%
Potassium
 
268.7
mg
8
%
Carbohydrates
 
17.3
g
6
%
Fiber
 
3.9
g
16
%
Sugar
 
5.6
g
6
%
Protein
 
3.8
g
8
%
Vitamin A
 
9530
IU
191
%
Vitamin C
 
7.5
mg
9
%
Calcium
 
44
mg
4
%
Iron
 
0.5
mg
3
%
Net carbs
 
13.4
g
* Percent Daily Values are based on a 2000 calorie diet.